DreEX6042017 @ danRer10
Exon Skipping
Gene
ENSDARG00000079752 | col6a6
Description
collagen, type VI, alpha 6 [Source:ZFIN;Acc:ZDB-GENE-041111-303]
Coordinates
chr16:36752200-36752513:+
Coord C1 exon
chr16:36752200-36752262
Coord A exon
chr16:36752337-36752399
Coord C2 exon
chr16:36752478-36752513
Length
63 bp
Sequences
Splice sites
3' ss Seq
AAATGAATGTCTGATAACAGGGC
3' ss Score
3
5' ss Seq
AGAGTATGT
5' ss Score
5.66
Exon sequences
Seq C1 exon
GGTGAATTGGGCTTTAAAGGCACAAACGGAGGTGTTGGTCCTAAAGGCAGCAGAGGAAGAGGG
Seq A exon
GGCAATGCTGGTAGGACGGGACCACCAGGAGATCCTGGCAGTGGGGGGATGACTGGACACAGA
Seq C2 exon
GGCCCGAAAGGACCACGAGGAGCCAGACAGATGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079752-'30-28,'30-27,31-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.846
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(19.8=86.4),PF0139113=Collagen=FE(33.9=100)
A:
PF0139113=Collagen=FE(33.9=100)
C2:
PF0139113=Collagen=PD(17.7=84.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGGCACAAACGGAGGTGT
R:
GACATCTGTCTGGCTCCTCGT
Band lengths:
84-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]