HsaEX6058470 @ hg19
Exon Skipping
Gene
ENSG00000206384 | COL6A6
Description
collagen, type VI, alpha 6 [Source:HGNC Symbol;Acc:27023]
Coordinates
chr3:130354543-130361711:+
Coord C1 exon
chr3:130354543-130354605
Coord A exon
chr3:130360496-130360558
Coord C2 exon
chr3:130361676-130361711
Length
63 bp
Sequences
Splice sites
3' ss Seq
AAAATAAATTCTCCTTTGAGATA
3' ss Score
-1.51
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GGTGAGATTGGGGACCCTGGTGGTCCAGGAGAGACTGGGCTGAAGGGAGCTAGAGGCAAAATG
Seq A exon
ATATCTGCTGGGCTTCCAGGAGAGATGGGATCCCCTGGGGAACCAGGACCTCCTGGACGTAAG
Seq C2 exon
GGTGTGAAAGGAGCCAAAGGCTTGGCTTCATTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000206384-'30-30,'30-29,31-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGTCCAGGAGAGACTG
R:
AGAAAATGAAGCCAAGCCTTTG
Band lengths:
82-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)