RnoEX6037284 @ rn6
Exon Skipping
Gene
ENSRNOG00000023007 | Col6a6
Description
collagen type VI alpha 6 chain [Source:RGD Symbol;Acc:1309172]
Coordinates
chr8:114378737-114386821:-
Coord C1 exon
chr8:114386759-114386821
Coord A exon
chr8:114380070-114380132
Coord C2 exon
chr8:114378737-114378772
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGACTTAATTCTGCTTTGAGGTA
3' ss Score
-0.05
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GGTGATATTGGGGACCCTGGCGATCCAGGAGAGGCTGGTCCCAAGGGAGCCAGAGGCAAAACG
Seq A exon
GTATCTGCTGGGATTCCAGGAGAGCCAGGATCCCCCGGGGAGCCAGGACCCCCTGGAAGGAAG
Seq C2 exon
GGCATGAAAGGAGCCCGAGGACTGGCTTCATTTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023007-'31-35,'31-34,33-35=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.500
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(38.5=100)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000056414fB3422
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCAGGAGAGGCTGGTCC
R:
AAAATGAAGCCAGTCCTCGGG
Band lengths:
76-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]