GgaEX6019506 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NWS8]
Coordinates
chr2:42168047-42170569:+
Coord C1 exon
chr2:42168047-42168109
Coord A exon
chr2:42168444-42168506
Coord C2 exon
chr2:42170534-42170569
Length
63 bp
Sequences
Splice sites
3' ss Seq
ACTTGTATTCATATTTTTAGGGT
3' ss Score
9.01
5' ss Seq
ATGGTAATA
5' ss Score
5.05
Exon sequences
Seq C1 exon
GGAGAAGATGGAGACCCAGGTATTTCAGGAGCTAAAGGACCAAAAGGAATTAGGGGTAGAAGG
Seq A exon
GGTAATGCTGGCACACCAGGTTCCCTGGGAGATCCAGGGGACCAAGGACCATCAGGACCCATG
Seq C2 exon
GGTGCCAAGGGACAAAGAGGCACTGTTTTAATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011567-'40-44,'40-42,41-44=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.667
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(17.0=76.2),PF0139113=Collagen=FE(32.3=100)
A:
PF0139113=Collagen=FE(32.3=100)
C2:
PF0139113=Collagen=PD(12.9=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGACCCAGGTATTTCAGGA
R:
AAAACAGTGCCTCTTTGTCCCT
Band lengths:
84-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]