BtaEX6004397 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012837 | COL6A6
Description
collagen, type VI, alpha 6 [Source:HGNC Symbol;Acc:HGNC:27023]
Coordinates
chr1:153352924-153360788:-
Coord C1 exon
chr1:153360726-153360788
Coord A exon
chr1:153354110-153354172
Coord C2 exon
chr1:153352924-153352959
Length
63 bp
Sequences
Splice sites
3' ss Seq
TAAATAAATTCTGCTTTAAGGTA
3' ss Score
6.75
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGTGAGGTCGGGGACCCTGGTGGCCCAGGACAAACTGGACCCAAGGGCGCTAGAGGCAAGACG
Seq A exon
GTATCTGCTGGGCTTCCCGGAGAACCAGGATCCCCTGGGGAGCTGGGACCTCCTGGACGCAAG
Seq C2 exon
GGTGTGAAAGGGGCCAAAGGATTGGCTTCGTTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012837-'29-35,'29-34,30-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.417
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(33.9=100)
A:
PF0139113=Collagen=FE(33.9=100)
C2:
PF0139113=Collagen=PD(16.9=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGCCCAGGACAAACTG
R:
AGAAAACGAAGCCAATCCTTTG
Band lengths:
81-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]