BtaEX0009735 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012837 | COL6A6
Description
collagen, type VI, alpha 6 [Source:HGNC Symbol;Acc:HGNC:27023]
Coordinates
chr1:153352770-153354172:-
Coord C1 exon
chr1:153354110-153354172
Coord A exon
chr1:153352924-153352959
Coord C2 exon
chr1:153352770-153352806
Length
36 bp
Sequences
Splice sites
3' ss Seq
CATTCTTTTTGTTTCCCCAGGGT
3' ss Score
10.9
5' ss Seq
TCTGTATGT
5' ss Score
3.86
Exon sequences
Seq C1 exon
GTATCTGCTGGGCTTCCCGGAGAACCAGGATCCCCTGGGGAGCTGGGACCTCCTGGACGCAAG
Seq A exon
GGTGTGAAAGGGGCCAAAGGATTGGCTTCGTTTTCT
Seq C2 exon
ACATGTGAGCTCATCCAGTATGTGCGGGACCATAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012837-'30-37,'30-35,31-37
Average complexity
S
Mappability confidence:
100%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.417 C2=0.308
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(33.9=100)
A:
PF0139113=Collagen=PD(16.9=83.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCTGCTGGGCTTCCC
R:
TATGGTCCCGCACATACTGGA
Band lengths:
97-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development