MmuEX0012342 @ mm9
Exon Skipping
Gene
ENSMUSG00000043719 | Col6a6
Description
collagen, type VI, alpha 6 [Source:MGI Symbol;Acc:MGI:2444259]
Coordinates
chr9:105617505-105619066:-
Coord C1 exon
chr9:105619004-105619066
Coord A exon
chr9:105617652-105617687
Coord C2 exon
chr9:105617505-105617541
Length
36 bp
Sequences
Splice sites
3' ss Seq
TTGCTTACTTCCTTTCCTAGGGT
3' ss Score
9.83
5' ss Seq
TCCGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
GTATCTGCTGGGATTCCAGGAGAGCCGGGGTCCCCCGGGGAGCCAGGACCCCCTGGACGGAAG
Seq A exon
GGTGTGAAAGGGGCCCGAGGACTGGCTTCGTTTTCC
Seq C2 exon
ACATGTGACCTCATTCAGTACGTGCGGGACCACAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043719-'30-30,'30-29,32-30
Average complexity
S
Mappability confidence:
100%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.500 C2=0.385
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGATTCCAGGAGAGCCG
R:
GTGGTCCCGCACGTACTGAAT
Band lengths:
88-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: