HsaEX1009475 @ hg38
Exon Skipping
Gene
ENSG00000206384 | COL6A6
Description
collagen type VI alpha 6 chain [Source:HGNC Symbol;Acc:HGNC:27023]
Coordinates
chr3:130641652-130643023:+
Coord C1 exon
chr3:130641652-130641714
Coord A exon
chr3:130642832-130642867
Coord C2 exon
chr3:130642987-130643023
Length
36 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTGTTTTCCTAGGGT
3' ss Score
10.08
5' ss Seq
TCTGTACGT
5' ss Score
4.47
Exon sequences
Seq C1 exon
ATATCTGCTGGGCTTCCAGGAGAGATGGGATCCCCTGGGGAACCAGGACCTCCTGGACGTAAG
Seq A exon
GGTGTGAAAGGAGCCAAAGGCTTGGCTTCATTTTCT
Seq C2 exon
ACATGTGAGCTCATTCAGTATGTGCGAGACCGCAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000206384-'35-45,'35-44,36-45
Average complexity
S
Mappability confidence:
100%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.500 C2=0.385
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCCAGGAGAGATGGGAT
R:
CGGTCTCGCACATACTGAATGA
Band lengths:
85-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains