GgaEX0017411 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NWS8]
Coordinates
chr2:42168444-42171439:+
Coord C1 exon
chr2:42168444-42168506
Coord A exon
chr2:42170534-42170569
Coord C2 exon
chr2:42171403-42171439
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTGTATTTAATTTGTTTCAGGGT
3' ss Score
9.58
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GGTAATGCTGGCACACCAGGTTCCCTGGGAGATCCAGGGGACCAAGGACCATCAGGACCCATG
Seq A exon
GGTGCCAAGGGACAAAGAGGCACTGTTTTAATGGAA
Seq C2 exon
CCTTGTGAACTTGTGAATTTTACACGAAAAAACTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011567-'41-45,'41-44,43-45
Average complexity
S
Mappability confidence:
100%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.667 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(32.3=100)
A:
PF0139113=Collagen=PD(12.9=66.7)
C2:
NO
Main Skipping Isoform:
ENSGALT00000018866fB4122
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAATGCTGGCACACCA
R:
CGTGTAAAATTCACAAGTTCACAAGG
Band lengths:
89-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]