GgaEX0017411 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr2:41588348-41591343:+
Coord C1 exon
chr2:41588348-41588410
Coord A exon
chr2:41590438-41590473
Coord C2 exon
chr2:41591307-41591343
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTGTATTTAATTTGTTTCAGGGT
3' ss Score
9.58
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GGTAATGCTGGCACACCAGGTTCCCTGGGAGATCCAGGGGACCAAGGACCATCAGGACCCATG
Seq A exon
GGTGCCAAGGGACAAAGAGGCACTGTTTTAATGGAA
Seq C2 exon
CCTTGTGAACTTGTGAATTTTACACGAAAAAACTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011567-'35-38,'35-37,36-38
Average complexity
S
Mappability confidence:
100%=100=75%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.667 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(33.3=100)
A:
PF0139113=Collagen=PD(13.3=66.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAATGCTGGCACACCA
R:
CGTGTAAAATTCACAAGTTCACAAGG
Band lengths:
89-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]