DreEX6042016 @ danRer10
Exon Skipping
Gene
ENSDARG00000079752 | col6a6
Description
collagen, type VI, alpha 6 [Source:ZFIN;Acc:ZDB-GENE-041111-303]
Coordinates
chr16:36752337-36752724:+
Coord C1 exon
chr16:36752337-36752399
Coord A exon
chr16:36752478-36752513
Coord C2 exon
chr16:36752688-36752724
Length
36 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTACCATATAGGGC
3' ss Score
9.56
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GGCAATGCTGGTAGGACGGGACCACCAGGAGATCCTGGCAGTGGGGGGATGACTGGACACAGA
Seq A exon
GGCCCGAAAGGACCACGAGGAGCCAGACAGATGTCT
Seq C2 exon
GACTGTCAGCTGATCTCATATGTTCGAGACAACTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079752-'31-29,'31-28,32-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.846 C2=0.077
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(33.9=100)
A:
PF0139113=Collagen=PD(17.7=84.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGCTGGTAGGACGGGAC
R:
ACAGTTGTCTCGAACATATGAGA
Band lengths:
97-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]