MmuEX6068385 @ mm9
Exon Skipping
Gene
ENSMUSG00000043719 | Col6a6
Description
collagen, type VI, alpha 6 [Source:MGI Symbol;Acc:MGI:2444259]
Coordinates
chr9:105617652-105625248:-
Coord C1 exon
chr9:105625186-105625248
Coord A exon
chr9:105619004-105619066
Coord C2 exon
chr9:105617652-105617687
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGACTTAATTCTGCTTTGAGGTA
3' ss Score
-0.05
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GGTGATATTGGGGACCCTGGTGATCCAGGAGAAGCTGGTCCCAAGGGAGCCAGAGGCAAAACG
Seq A exon
GTATCTGCTGGGATTCCAGGAGAGCCGGGGTCCCCCGGGGAGCCAGGACCCCCTGGACGGAAG
Seq C2 exon
GGTGTGAAAGGGGCCCGAGGACTGGCTTCGTTTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043719-'29-29,'29-28,30-29=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCCAGGAGAAGCTGGTCC
R:
GAAAACGAAGCCAGTCCTCGG
Band lengths:
78-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: