DreEX6042023 @ danRer10
Exon Skipping
Gene
ENSDARG00000079752 | col6a6
Description
collagen, type VI, alpha 6 [Source:ZFIN;Acc:ZDB-GENE-041111-303]
Coordinates
chr16:36749425-36750780:+
Coord C1 exon
chr16:36749425-36749460
Coord A exon
chr16:36749541-36749603
Coord C2 exon
chr16:36750718-36750780
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTTGGTTTGCTTGTTTTTAGGGT
3' ss Score
9.56
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GGTCAATCTGGCAGAAGAGGGACGGCAGGTCTACCG
Seq A exon
GGTCCCAGAGGGCCTCCAGGAGATCCAGGTTTACAAGGACTTCCAGGGGGCTCGGGTCCACAG
Seq C2 exon
GGCCCTTTTGGTCCTCCTGGTCCAGTTGGGCAAAGAGGTTTTGTTGGTCTGCCTGGACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079752-'22-21,'22-20,24-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(15.9=50.0)
C2:
PF0139113=Collagen=FE(30.4=100),PF0139113=Collagen=PU(5.2=22.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAATCTGGCAGAAGAGGG
R:
TCCAGGCAGACCAACAAAACC
Band lengths:
93-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]