BtaEX6004392 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012837 | COL6A6
Description
collagen, type VI, alpha 6 [Source:HGNC Symbol;Acc:HGNC:27023]
Coordinates
chr1:153380101-153384026:-
Coord C1 exon
chr1:153383991-153384026
Coord A exon
chr1:153381789-153381851
Coord C2 exon
chr1:153380101-153380163
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTGATTCTCCCTCCCCATAGGGG
3' ss Score
11.9
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GCAGCTCATGGCCAGAGGGGACATACAGGCCCACAG
Seq A exon
GGGAAACCAGGCATCCCAGGTCCAGACGGACTTGCAGGGTCACTGGGACTTAAGGGCCCTCAG
Seq C2 exon
GGTCCAAGAGGAGAAGCTGGTGTGAAAGGAGAAAAAGGAAATCTGGGAAGTAAAGGTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012837-'22-25,'22-24,23-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(0.1=0.0),PF0139113=Collagen=FE(18.3=100),PF0139113=Collagen=PU(11.8=83.3)
A:
PF0139113=Collagen=PD(26.7=76.2),PF0139113=Collagen=FE(23.5=100)
C2:
PF0139113=Collagen=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCATGGCCAGAGGGGA
R:
GGACCTTTACTTCCCAGATTTCCT
Band lengths:
92-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]