MmuEX6068378 @ mm9
Exon Skipping
Gene
ENSMUSG00000043719 | Col6a6
Description
collagen, type VI, alpha 6 [Source:MGI Symbol;Acc:MGI:2444259]
Coordinates
chr9:105638678-105641553:-
Coord C1 exon
chr9:105641518-105641553
Coord A exon
chr9:105640529-105640591
Coord C2 exon
chr9:105638678-105638740
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTGGTTCTTTCTCATCACAGGGA
3' ss Score
8.45
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
GTAGTTCATGGCCGAAGAGGACACATAGGCCCACAG
Seq A exon
GGAAATCCAGGAACCCCGGGCCCAGATGGACTTGCAGGTTCGCCAGGACTTAGAGGCCCGCAG
Seq C2 exon
GGTCCAAGAGGAGAGGTCGGTGAGAAAGGAGAAAAAGGAAGTCTGGGAATGAAAGGTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043719-'22-22,'22-21,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(13.8=91.7)
A:
PF0139113=Collagen=FE(25.0=100)
C2:
PF0139113=Collagen=FE(25.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGTTCATGGCCGAAGAGGA
R:
TGAGGACCTTTCATTCCCAGACT
Band lengths:
98-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: