RnoEX6038183 @ rn6
Exon Skipping
Gene
ENSRNOG00000014477 | Acvr2b
Description
activin A receptor type 2B [Source:RGD Symbol;Acc:2028]
Coordinates
chr8:128112789-128113686:+
Coord C1 exon
chr8:128112789-128112996
Coord A exon
chr8:128113303-128113412
Coord C2 exon
chr8:128113535-128113686
Length
110 bp
Sequences
Splice sites
3' ss Seq
CGGGGACTCTGGGTTTTCAGGCA
3' ss Score
4.66
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTTCCGGGCGAGGGGAAGCTGAGACTCGGGAGTGCATCTACTACAACGCCAACTGGGAGCTGGAGCGCACCAACCAGAGCGGCCTGGAGCGCTGCGAGGGGGAACAGGACAAGCGGCTGCACTGCTATGCCTCGTGGCGCAACAGCTCGGGCACCATCGAGCTGGTGAAGAAGGGCTGCTGGCTAGATGACTTCAATTGCTACGACAG
Seq A exon
GCAGGAGTGTGTGGCCACTGAGGAGAACCCCCAGGTGTATTTCTGCTGCTGTGAAGGCAATTTCTGCAACGAGCGCTTCACCCATTTGCCGGAGCCTGGGGGCCCAGAAG
Seq C2 exon
TCACGTACGAGCCACCCCCGACAGCCCCCACCCTGCTCACGGTGCTGGCCTATTCGCTGCTGCCCATTGGAGGCCTCTCTCTCATCGTCCTGCTGGCCTTCTGGATGTACCGACATCGAAAGCCTCCCTACGGCCACGTGGACATCCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014477-'4-2,'4-1,5-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.132 C2=0.196
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PU(65.9=85.7)
A:
PF0106418=Activin_recp=PD(33.0=78.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACTACAACGCCAACTGGGA
R:
TGAGAGAGAGGCCTCCAATGG
Band lengths:
256-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]