BtaEX6093413 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018105 | ACVR2B
Description
Bos taurus activin A receptor, type IIB (ACVR2B), mRNA. [Source:RefSeq mRNA;Acc:NM_174495]
Coordinates
chr22:11887492-11888362:+
Coord C1 exon
chr22:11887492-11887699
Coord A exon
chr22:11887947-11888056
Coord C2 exon
chr22:11888211-11888362
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATGGGAAACTGTGCCTCCAGGCA
3' ss Score
3.31
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTTCGGGGCGCGGGGAGGCCGAGACACGGGAGTGCATCTACTACAACGCCAACTGGGAGCTGGAGCGCACCAACCAGAGCGGCCTGGAGCGCTGCGAGGGCGAGCGGGACAAGCGGCTGCACTGCTACGCCTCCTGGCGCAACAGCTCGGGCACCATCGAGCTCGTCAAGAAAGGCTGCTGGCTGGACGACTTCAACTGCTACGACAG
Seq A exon
GCAGGAGTGCGTGGCCACCGAGGAGAACCCCCAGGTGTACTTCTGCTGCTGCGAAGGCAACTTCTGCAACGAGCGCTTCACCCACCTGCCCGAGGCGGGCGGCCCAGAAG
Seq C2 exon
TCACGTACGAGCCACCCCCGACAGCCCCCACCCTGCTCACTGTGCTGGCCTACTCGCTGCTGCCCGTCGGGGGCCTCTCCCTCATCGCCCTGCTGGCCTTCTGGATGTACCGACATCGCAAGCCCCCCTACGGCCACGTGGACATCCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018105-'5-3,'5-1,6-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.132 C2=0.196
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PU(65.9=85.7)
A:
PF0106418=Activin_recp=PD(33.0=78.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCGCACCAACCAGAG
R:
GTACATCCAGAAGGCCAGCAG
Band lengths:
257-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]