GgaEX1006212 @ galGal4
Exon Skipping
Gene
ENSGALG00000006158 | ACVR2B
Description
activin receptor type-2B precursor [Source:RefSeq peptide;Acc:NP_989648]
Coordinates
chr2:5734462-5739855:-
Coord C1 exon
chr2:5739644-5739855
Coord A exon
chr2:5735920-5736029
Coord C2 exon
chr2:5734462-5734613
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGCTGCTGCGTGTGACGCAGGCA
3' ss Score
5.83
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
TCAGGACCAGGTCACGGGGAGGCAGAGACGAGGGAATGCATTTACTACAACGCCAACTGGGAGCTGGAGAAGACCAACCAGAGTGGCGTGGAGCGCTGCGAGGGGGAGAAGGACAAGCGGCTCCACTGCTACGCCTCCTGGAGAAACAACTCGGGATCCATTGAGCTGGTGAAGAAAGGCTGCTGGTTAGATGACTTCAACTGTTATGACAG
Seq A exon
GCAGGAGTGCGTAGCCACAGAAGAAAACCCTCAAGTGTTTTTCTGCTGCTGCGAGGGCAACTACTGCAATGAGAAATTCACCCACTTGCCTGAAGTAACTGGCCCAGAAG
Seq C2 exon
TCATATATGAGCCGCCACCACCAACACCCTCCCTGCTTAACATCCTGGTGTACTCTCTGCTGCCCATCGCTGTCCTGTCAGTGGCCATCCTCTTGGCCTTCTGGATGTATCGGCACCGCAAGCCTCCCTACGGGCACGTTGACATCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006158-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.026 C2=0.137
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PU(65.9=84.5)
A:
PF0106418=Activin_recp=PD(33.0=78.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGACCAACCAGAGTGGC
R:
ACATCCAGAAGGCCAAGAGGA
Band lengths:
254-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]