DreEX0011038 @ danRer10
Exon Skipping
Gene
ENSDARG00000104700 | acvr2ab
Description
activin A receptor, type IIAb [Source:ZFIN;Acc:ZDB-GENE-120215-23]
Coordinates
chr6:870359-872666:+
Coord C1 exon
chr6:870359-870566
Coord A exon
chr6:870649-870752
Coord C2 exon
chr6:872512-872666
Length
104 bp
Sequences
Splice sites
3' ss Seq
GCTGTGTGTTGTGTGTGCAGCAG
3' ss Score
7.11
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
GTGCGATTCTGGGCCGCTCGGAGACACAGGAGTGTGTGTATTATAATGTGAGCTGGGAGAAGGACGGAACAAACAGGAGCGGCACGGAGTCATGTTATGGAGAAAAGGACAAGCGGCGACACTGTTTCTCCACCTGGAAGAACCGCTCGGGGACCATCGAGATGGTCAAGCAGGGCTGCTGGCTGGACGATGTCAACTGCTACGACAG
Seq A exon
CAGTGAGTGTGTGGAGCGCAAAGAGAATATTGATGTCTTCTTCTGCTGCTGCGAGGGAAACTTGTGCAACCAGAAGTTTCACTACAATCCAGAGACGGTTGAGC
Seq C2 exon
CCACGTTGAACCCCGTCCCCCCGAAGCCGGACTTGTTTCCCACGCTGCTCTACTCTCTGCTGCCCATCATGGCGGTCGCCGTAATTCTCTTCATCTCCTTCTGGATGTACCGTCACCTGAAGTTGACGTACCCGCCGCTGCTCGTGCCGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104700-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PU(65.9=85.7)
A:
PF0106418=Activin_recp=PD(33.0=85.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGAAAAGGACAAGCGGC
R:
CGGGTACGTCAACTTCAGGTG
Band lengths:
246-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]