RnoEX6041995 @ rn6
Exon Skipping
Gene
ENSRNOG00000029964 | Tmprss11g
Description
transmembrane protease, serine 11G [Source:RGD Symbol;Acc:1306446]
Coordinates
chr14:23200109-23207327:+
Coord C1 exon
chr14:23200109-23200368
Coord A exon
chr14:23203951-23204093
Coord C2 exon
chr14:23205789-23207327
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTTATTGTTTCCTCCTTTAGGTC
3' ss Score
12.29
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTACAAAAACCCCAAACTGTGGACAGTAAGTTTTGGAAGAACCCTTGGCAATCCACTGACCACACGGAAGGTGGAGTCCATCATCATTCACGAGAACTACGCAGCCCACAAACACGATGACGATATCGCTGTGGTCAAGCTCTCCAGCCCGGTGCTCTTTTCTGAAAATTTGCGCACAGTCTGTCTCCCTGAGGCTACTTTTCAAGTCTTGCCGAAGAGTAAAGTGTTTGTCACTGGATGGGGAGCACTGAAAGCGAATG
Seq A exon
GTCCCTTTCCCAATTCTCTGCAAGAGGTTGAAATAGAGATCATAAGTAATGATGTATGTAACCAAGTTAATGTATATGGTGGTGCTATATCATCAGGAATGATATGTGCTGGATTCCTGACAGGAAAACTGGATGCCTGTGAG
Seq C2 exon
GGTGATTCTGGAGGGCCTCTGGTTATCTCAGATAATAGAAATAAGTGGTATCTTCTTGGAATTGTTAGTTGGGGAATAGACTGTGGAAAAGAAAACAAGCCCGGAATTTACACCAGAGTGACTCACTATCGGAACTGGATTAAATCTAAAACTAACATCTAATGCAACAGCCACCCCTTTATTCAACCTGGAGTGTCACCCACTGCATCTGGCAAACCGTATTCCATACCCACTGCCATGTGCGTCCTCATCGAGCTCAAGATGCACATGAGTATGGGACAGTGACCTCCCTCTTAAATCAGAAGGAGATAGACTTTCTTTCACATCAGTGGAAGGGTTCCGTTGACTATGAACACATAAGATGCTGTCTGCTTCACAAAGATCTACCATTCTGCCAAGTGTCTGATTACCTCCCTGCTCACCTCTGTTCTCCAACCTCATTCGTTTTCAACTTATACTAATCTGGAAGTTGAATAAGTACTAACTGTCCAGCCTCCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029964-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.5=100)
A:
PF0008921=Trypsin=FE(20.8=100)
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCAATCCACTGACCACAC
R:
AGATAACCAGAGGCCCTCCAG
Band lengths:
244-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]