BtaEX0000937 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BJM8]
Coordinates
chr6:85410241-85419111:-
Coord C1 exon
chr6:85418852-85419111
Coord A exon
chr6:85413969-85414111
Coord C2 exon
chr6:85410241-85411796
Length
143 bp
Sequences
Splice sites
3' ss Seq
GTTTATTTTTTTCTCTTTAGGTC
3' ss Score
12.03
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
GTACAAAAACCCCAAACGCTGGACAGCTAGCTTTGGAACAACTCTAAGCCCCGCACTAATGAGACAAGAGGTGCAGTCGGTTGTCATTCATGAAGACTATGCTTCCCATAAGCATGATGATGACATCGCTCTGGTGAAGCTCTCCGCCCCTGTCATATTTTCGGATGAGGTGCACAGAGTCTGTCTCCCGGATGCTACTTTTGAAGCCTTGCCTGAGAGCAAAGTGTTTGTCACTGGATGGGGAGCTCTAAAAGCAAATG
Seq A exon
GTCCCTTTCCCAATACTCTGAGAGAAGTTGAAGTAGAGATCATAAGTAATGATATATGTAATCAAATTCATGTATATGGTGGAGCTGTATCATCAGGAATGATATGTGCTGGATTCTTGAAAGGAAAACTAGATGCCTGTGAA
Seq C2 exon
GGTGATTCTGGAGGACCTCTGGTTATACCACGTGATGGAAACATCTGGTATCTTATCGGAATAGTAAGCTGGGGAATGGACTGTGGGAAAGAAAACAAGCCTGGAGTCTATACCAAAGTGACTCGTTATCGGGACTGGATTAAGTCTAAAACTGACATCTAATGTAATAATCACCTCTACATCCAAAATGTAAATGCCATGTGTGGCCTCTGGCAATATCATGTGCTGCTATGTATATTGTCAAGATGCAAATAAGCCTGTTCTGACAACTCTCCTCTAACATGTGAGGAAAGAAGGCTTTCTTTCACATCACCTGAAGTGTCTCACTGACCATAGTGTTAACTCCAGTAAGATCTGCCATTGCTGCTAAGTGTCTCTGATTGCCTCCTGGCTCATCTTTTGGTTTCTACTACACACTTTCCATTTTAGAAAAATCCAGCAGTTTAATCAGATGAGTACCAGCTGGCTAAGTATTCCTTATTTTTTTCCTGCACAGCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025920_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.5=100)
A:
PF0008921=Trypsin=FE(20.8=100)
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCCCTGTCATATTTTCGG
R:
TCCAGTCCCGATAACGAGTCA
Band lengths:
256-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development