MmuEX6018469 @ mm10
Exon Skipping
Gene
ENSMUSG00000079451 | Tmprss11g
Description
transmembrane protease, serine 11g [Source:MGI Symbol;Acc:MGI:2444058]
Coordinates
chr5:86485876-86490977:-
Coord C1 exon
chr5:86490718-86490977
Coord A exon
chr5:86489183-86489325
Coord C2 exon
chr5:86485876-86487560
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTTATTGTTTCCTTCTCTAGGTC
3' ss Score
12.57
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
TTACAAAAACCCCAAACTGTGGACAGTAAGTTTTGGACGGACCCTTAGCAGTCCACTGACAACACGGAAGGTGGAGTCCATCATTGTTCACGAGAACTACGCCTCCCACAAGCACGACGATGACATAGCTGTGGTCAAGCTCTCCAGCCCCGTGCTGTTTTCTGAAAATTTGCACAGAGTCTGTCTCCCTGATGCGACTTTTCAAGTCTTGCCAAAGAGTAAAGTGTTTGTCACCGGATGGGGAGCACTGAAAGCAAATG
Seq A exon
GTCCCTTTCCCAATTCTCTGCAAGAGGTTGAAATAGAGATCATAAGTAATGATGTATGTAATCAAGTTAATGTATACGGTGGTGCTATATCCTCAGGAATGATATGTGCTGGATTCTTGACAGGAAAACTAGATGCCTGTGAA
Seq C2 exon
GGTGATTCTGGAGGGCCTCTGGTTATTTCAGATAATAGAAATAAGTGGTATCTTCTTGGAATTGTTAGTTGGGGAATAGACTGTGGAAAAGAAAACAAGCCCGGAATTTACACCAGAGTGACTCATTATCGGGACTGGATTAAATCTAAAACTAGCATCTAATGCCACAGCCACCCCTTTATCCACCCTGGAGTGTCACACATGGCCTCTGGCAAACCTTATTCCATGTTCATCACCATGTGCATTGCCATTTAGCTCAAGATGCAAATGAGTATGTCGCAGTGACCTTCAGAAGGGGACAGACTTCCTTTTACATCATTGGAAGGGTTCCATTGACTATGAACAAAATAGATGCCATCAGCTTCACAAAGATCTACCATTCTGCAAAGTGTCTGATTACCTCCCTGCTCACCTCTGTTCTCCTACCTCATTTTTTTTTTAACTTATACTCATCTGGAAGTCAAATAAATACTAACTGTCCAGCCACCCTCTGCTTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079451-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.5=100)
A:
PF0008921=Trypsin=FE(20.8=100)
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTCTCCCTGATGCGACTT
R:
GGGTGGCTGTGGCATTAGATG
Band lengths:
257-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types