RnoEX6042006 @ rn6
Exon Skipping
Gene
ENSRNOG00000055991 | Tmprss11d
Description
transmembrane serine protease 11D [Source:RGD Symbol;Acc:620654]
Coordinates
chr14:23378648-23389594:+
Coord C1 exon
chr14:23378648-23378825
Coord A exon
chr14:23387253-23387512
Coord C2 exon
chr14:23389452-23389594
Length
260 bp
Sequences
Splice sites
3' ss Seq
TTATTTTATGTTGTTTTTAGCTA
3' ss Score
8.41
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
AATGTGGAGCACGTCCAGACCTTATAACACTGTCAGAAGAGAGAATCATTGGAGGCACTCAAGCTGAGACAGGTGACTGGCCCTGGCAAGTCAGTCTACAGCTCAACAATGTCCACCACTGTGGAGGTACCCTGATCAGTAACTTGTGGGTCCTGACAGCCGCTCACTGCTTCAGAAG
Seq A exon
CTACTCGAATCCTCAACAATGGACAGCCACCTTTGGTGTTTCTACAATAAGTCCTAGGTTAAGAGTGAGAGTAAGGGCTATTTTAGCCCATGCTGAGTACAACTCCATAACTCGTGATAATGATATTGCAGTTGTACAACTTGACAGACCTGTCACCTTTACCAGAAATATCCATAGGGTATGTCTCCCAGCAGCAACCCAAAATATCATACCTGATTCCGTCGCATATGTCACAGGATGGGGATCTCTCACTTATGGAG
Seq C2 exon
GCAACACGGTCACAAATCTACAGCAAGGAGAGGTCAGAATAGTAAGTTCGGAGGTGTGCAACGAGCCAGCTGGCTACGGTGGGAGTGTCTTGCCAGGAATGCTCTGTGCTGGAGTCCGTTCAGGGGCCGTGGATGCATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055991-'12-7,'12-6,13-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.5=73.3)
A:
PF0008921=Trypsin=FE(38.5=100)
C2:
PF0008921=Trypsin=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCACGTCCAGACCTTATA
R:
TGAACGGACTCCAGCACAGAG
Band lengths:
295-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]