RnoEX6043334 @ rn6
Exon Skipping
Gene
ENSRNOG00000025645 | Abca13
Description
ATP binding cassette subfamily A member 13 [Source:RGD Symbol;Acc:1305895]
Coordinates
chr14:89696798-89710388:+
Coord C1 exon
chr14:89696798-89697065
Coord A exon
chr14:89704227-89704310
Coord C2 exon
chr14:89710319-89710388
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTCACCGTCAACAGCAG
3' ss Score
5.85
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTGGCTCTCTTATGAGAACTCTACCAGATTCCCTGCCTGAGCCAATGGGTGGCTGTCAGCTTCTTCTGGGACAAGCAGGGGCACTCCTGAGAAAGCGGCTACTGCATACACTCCGAGCTTGGAAAAGCACCACCTCAGATCTGTTCCTACCTGTGCTCTTTGTGGCCTTGGCCATGGGCTTGTTCATGGTGCAGCCTCTGGCCATTACATACCCTCCACTCAAACTTACACCTGGCCATTATGAGACTGCAGAAGCTTACTTCTTCAG
Seq A exon
CAGTGGGAACCATGACCCGGACCTCACCCACGTGCTTCTGCGCAGGTTCGGAGATCAGGACCCTGTTTGTTCTGATGCTCAATG
Seq C2 exon
GGTGAATTCTTCAAGCTGGCATAGGGACCCTTATTCCGGCCCAGAATTCCAGGACTCATGTGGCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025645-'48-46,'48-45,49-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCACCTCAGATCTGTTCC
R:
GGCCGGAATAAGGGTCCCTAT
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]