BtaEX6026065 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003531 | ABCA13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
Coordinates
chr4:7267641-7281413:-
Coord C1 exon
chr4:7281164-7281413
Coord A exon
chr4:7271495-7271584
Coord C2 exon
chr4:7267641-7267710
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTTTGTCTCCCGATGAGCAGCAG
3' ss Score
1.81
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
ACCGCACACCTGCTGGCACACCCCTGGTGCGGGGTGGCCCCCTACTCCTGGCACAGACAACTGCCCTCCTGCGGAAGCGGCTTCTCCATGCTCGCCGGGCCTGGAAGGGCACCATCTCCGACCTACTGCTACCCGTGCTCTTCGTGGCCTTGGCCATGGCCTTGTTCATGGTCAGGCCTTTGGCCATCAACTACCCTCCCCTCAAACTGGCCCTGGGTCATTACGACAAGGCAGAAACCTACTTCTTCAG
Seq A exon
CAGTGAGAACGATGGCCTGGAGCTCACCCGGGTGCTTTTGCGGAAGTTTGGGGATCAGGATCCGCCCTGTGCTGACTTATACCCAGACCT
Seq C2 exon
GGAGAATTCTTCCTGCTGGCACACCGACCCCTCCTCTCACTGGGGAGTCCAAGAGTCCTGTGGCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003531-'52-54,'52-53,55-54=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCATCTCCGACCTACT
R:
GGTGTGCCAGCAGGAAGAATT
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]