HsaEX0000250 @ hg38
Exon Skipping
Gene
ENSG00000179869 | ABCA13
Description
ATP binding cassette subfamily A member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
Coordinates
chr7:48455037-48471599:+
Coord C1 exon
chr7:48455037-48455286
Coord A exon
chr7:48466956-48467045
Coord C2 exon
chr7:48471530-48471599
Length
90 bp
Sequences
Splice sites
3' ss Seq
TGTCTCACAATGAACAGCAGCAG
3' ss Score
-1.81
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GTGGCTCCCTAGCACGGCCCGCAACTGTGCAGGGCGTCCAGCTGCTCCGCGCACAAGTGGCCGCGATCCTGGCCCGGAGGCTCCGCCGCACGCTGCGCGCCGGGAAGAGCACCCTCGCCGACCTGCTGCTGCCAGTCCTCTTCGTGGCCTTGGCCATGGGCTTGTTCATGGTGAGACCCCTGGCCACCGAGTACCCTCCCCTCAGACTCACACCTGGACATTACCAGCGGGCCGAGACCTACTTTTTCAG
Seq A exon
CAGTGGGGGCGACAACTTGGACCTCACCCGTGTGCTTCTGCGGAAGTTTAGAGATCAAGATTTGCCCTGTGCAGATTTAAACCCACGCCA
Seq C2 exon
GAAGAATTCTTCATGCTGGCGCACAGATCCCTTTTCTCACCCAGAATTCCAGGATTCATGTGGCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179869-'73-88,'73-87,77-88
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.032 C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCTGCCAGTCCTCTT
R:
TGAGAAAAGGGATCTGTGCGC
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development