MmuEX6084013 @ mm10
Exon Skipping
Gene
ENSMUSG00000004668 | Abca13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:MGI Symbol;Acc:MGI:2388707]
Coordinates
chr11:9510461-9529047:+
Coord C1 exon
chr11:9510461-9510731
Coord A exon
chr11:9522336-9522419
Coord C2 exon
chr11:9528978-9529047
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTCACCGTCAACAGCAG
3' ss Score
5.85
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATGTCTCTCCCCTGAGCACTCCACCAGAAGGGGCCCTGCCTGAGCCGATAGGTGGCTGCCAGCTACTTCTGGGACAAGCAGTGGCACTCCTGAGGAAGCGGCTACTGCATACACTTCGAGCCTGGAAAAGCACCACCTCAGATTTGTTACTGCCTGTGCTCTTTGTGGCCTTGGCCATGGGCTTGTTCATGGTGCAGCCTTTGGCCATCACGTACCCTCCACTCAAACTTACACCTGGCCATTACGAGACTGCAGAAACTTACTTCTTCAG
Seq A exon
CAGTGGGAACCATGGCCCAGACCTAACTCATGTGCTTCTGCGCAAGTTCCGAGATCAAGACCCTGTCTGTGCTGATGCTTTCAG
Seq C2 exon
GATGAATTCTTCAAGCTGGCATAGGGACCCTTATTCTGGCCCAGAATCCCAGGACTCATGTGGCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004668-'59-62,'59-53,62-62=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.000 C2=0.083
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAAAAGCACCACCTCAG
R:
GGTCCCTATGCCAGCTTGAAG
Band lengths:
180-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types