RnoEX6044595 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:68168004-68175821:-
Coord C1 exon
chr13:68175677-68175821
Coord A exon
chr13:68172233-68172354
Coord C2 exon
chr13:68168004-68168279
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTCCCTTTTCTTGTCCCCAGAGA
3' ss Score
11.57
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
ATGCTCCCAAAGTTACAATGCCCACGAGGACCTCAGGATACTACCTACAGCCAGGCCGAATCCTCTGCTCGGTTGAGAGTCTTTTGCCCTTTACTTTGAGCTTCGTGAGAAATGGAATTGCCCTGGGAGTAGAGCAATATTTAAA
Seq A exon
AGAATCTGCCAGTGTGCCTTGGGATTTCCCAAAGGTGACGTTGTCTGACGAGGGCTTCTACGAGTGTATTGCTATGAACAGCGCAGGAACTGGACGGGCGCAGACATTTTTTGATGTATCAG
Seq C2 exon
AGCCCCCTCCGATCATCCAAGTGCCTAATAATGTAACAGTCACTCCTGGAGAAAGAGCAGTTTTGGCGTGTCTCGTCATCAGTGCCGTGGATTATAACCTAACCTGGCAGAGGAGTGGCAGGGATGTCCGGCTAGCAGACTCAGCAAGAATTAGGACCCTGGCCAACCTCTCCCTGGAGCTGCGGAGTGTGAAAATTGGTGATGCTGGGGAGTACCGTTGTGTGGTTTCCAGTGAAGGGGGATCGGCAGCAGCTTCGGTTTTCCTGACAGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0767911=I-set=WD(100=95.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAATCCTCTGCTCGGTTGAG
R:
GGCCAGGGTCCTAATTCTTGC
Band lengths:
253-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]