RnoEX6048852 @ rn6
Exon Skipping
Gene
ENSRNOG00000007596 | Rffl
Description
ring finger and FYVE-like domain containing E3 ubiquitin protein ligase [Source:RGD Symbol;Acc:727916]
Coordinates
chr10:70167431-70220558:-
Coord C1 exon
chr10:70220418-70220558
Coord A exon
chr10:70172554-70172741
Coord C2 exon
chr10:70167431-70167838
Length
188 bp
Sequences
Splice sites
3' ss Seq
TTCTTCCTCTCCTATGCCAGATT
3' ss Score
8.53
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AAGGATGTGGTGCTGGCACCCGGGCGCCCCTCAGCCGCGGAGTTGCGGCGGCCGCCGACCCGGCAGCCCCGCTGCCTGAGTGGCCGCAGTGGGGATCTGGGCTTTGCCGTCCCAGGTGTGGCCCGGCAGCGTCCGCGGCAG
Seq A exon
ATTTTATCATGTGGGCATCCTGCTGCAACTGGTTCTGCTTGGATGGACAGCCTGAGGAGACACCACCACCGCAGGGAGCCAGGACACAAGCCTATTCCAACCCTGGGTACAGCTCCTTCCCTTCCCCCACAGGCTCGGAACCTAGCTGCAAGGCCTGTGGGGTCCATTTCGCAAGCACCACCCGGAAG
Seq C2 exon
CAGACCTGCTTGGACTGTAAGAAAAACTTCTGCATGACTTGCTCCAGCCAAGAGGGGAATGGGCCACGCCTCTGCCTTCTCTGCCTACGCTTCCGAGCCACGGCCTTTCAGCGAGAGGAGCTCATGAAGATGAAGGTGAAGGACCTGAGGGACTATCTCAGCCTCCATGACATCTCTACTGAAATGTGCCGGGAGAAAGAAGAACTGGTGTTTCTGGTGCTTGGCCAGCAGCCTGTAATTTCTGAGGCGGACAGGACTCGTGCTCCCACCTTGCCCCAGGCCTTCCCTGAGCAGCAGGCCTTCTTGACCCAGCCTCAGAGCAGCACAGTACCTCCTACCTCACCTGGCCTCCCTTCTTCACCTGCACAAGTCACCTCTGTGTTAGCCCAGGATCAGGAAACTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007596-'0-11,'0-7,11-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.203 C2=0.390
Domain overlap (PFAM):
C1:
NA
A:
PF0231811=FYVE_2=PU(30.4=35.0)
C2:
PF0231811=FYVE_2=PD(66.7=33.6),PF102084=Armet=WD(100=55.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGGGATCTGGGCTTTG
R:
TTTCTCCCGGCACATTTCAGT
Band lengths:
253-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]