RnoEX6051847 @ rn6
Exon Skipping
Gene
ENSRNOG00000020647 | Ctsg
Description
cathepsin G [Source:RGD Symbol;Acc:1307681]
Coordinates
chr15:35111767-35112868:-
Coord C1 exon
chr15:35112721-35112868
Coord A exon
chr15:35112191-35112329
Coord C2 exon
chr15:35111767-35112021
Length
139 bp
Sequences
Splice sites
3' ss Seq
GACTGATCTTTCTTTCGCAGCTC
3' ss Score
9.07
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
GAAAGATCATTGGAGGCCGAGAAGCCAGGCCAAATTCCCACCCCTACATGGCATTTCTTCTGATCCAGAGTCCAGAAGGGCTGAGTGCTTGTGGAGGGTTTCTGGTGCGAGAAGACTTTGTCCTCACAGCAGGTCACTGCTTTGGAAG
Seq A exon
CTCCATAAATGTTACCCTAGGGGCCCACAACATTCGAAGGCAAGAAGGGACCCAGCAACACATCACTGTTCTCAGAGCCATCCGCCATCCTGATTACAATCCCCCGCCAGTCATCCAGAATGACATCATGCTACTGCAG
Seq C2 exon
CTGAGGAGTAGAGCCCGGAGGAGTCGAGCGGTGAAGCCCGTGGCTCTGCCTCAAGCCACCAAGAGAGTACAACCAGGGGCTTTGTGCACAGTGGCTGGCTGGGGCCTGGTGAGCCAGCGCAGGGGGACAAATGTACTCCAGGAGGTGAAGCTAAGAGTGCAGACGGACCAAACGTGCGCCAATCGTTTCCAATTCTACAACAGCCAGACTCAGATCTGTGTGGGAAACCCGAGAGAAAGGAAGTCTGCCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020647-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.021 C2=0.141
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.5=94.0)
A:
PF0008921=Trypsin=FE(21.0=100)
C2:
PF0008921=Trypsin=FE(38.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCCCTACATGGCATTTC
R:
GAGTACATTTGTCCCCCTGCG
Band lengths:
250-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]