RnoEX6054387 @ rn6
Exon Skipping
Gene
ENSRNOG00000018478 | Myo3a
Description
myosin IIIA [Source:RGD Symbol;Acc:1560083]
Coordinates
chr17:89015405-89031269:+
Coord C1 exon
chr17:89015405-89015470
Coord A exon
chr17:89018243-89018398
Coord C2 exon
chr17:89031170-89031269
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTTTGCCAGTGCAGATG
3' ss Score
4.72
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAATCCACCCCCTAAACTCCGGCAGCCTGAGCTGTGGTCCGCAGAGTTCAATGACTTCATTAGCAA
Seq A exon
ATGCTTGACCAAAGATTACGAGAAGCGTCCAACAGTGTCAGATCTCTTGAAGCATAAATTCATTACTCAGATCGAAGGCAGAGATGCAATACTGCAGAAACAACTCATGGAATTCATTGATATTCACCAATGCCTGGGAAGCACAGAGAAGGCCAG
Seq C2 exon
GCATGAACGAATTCATACCAAGAAAGGTAACTTAAATAGATCTCTCATTTCCAGTCTGAAGGATGTAGATGATTTGGCCACCCTAGATGTTTTGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018478-'9-13,'9-10,10-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=0.006 C2=0.118
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.2=100)
A:
PF0006920=Pkinase=PD(7.9=39.6)
C2:
PF0006316=Myosin_head=PU(1.6=32.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCCACCCCCTAAACTCCG
R:
TCCAAAACATCTAGGGTGGCC
Band lengths:
162-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]