GgaEX6018644 @ galGal3
Exon Skipping
Gene
ENSGALG00000007647 | MYO3A
Description
NA
Coordinates
chr2:16260685-16270901:-
Coord C1 exon
chr2:16270836-16270901
Coord A exon
chr2:16270273-16270428
Coord C2 exon
chr2:16260685-16260784
Length
156 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTTCTGCCAGCACAGGTG
3' ss Score
2.49
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GAATCCTCCTCCAACACTACAGCAGCCTGAACTGTGGTCATCTGAATTCAATGACTTCATTAACAA
Seq A exon
GTGCTTAACTAAAGACTATGAGAAGCGCCCAACAGTGTCTAGTCTTTTGCAGCATGATTTTATTAAGCAGATTGAAGGAAAGGAAAACGTGCTACAAAGACAACTTATGGAATTTATTGATGTTCATCAACAAATGGGAGTCACTGAAAAGGCAAG
Seq C2 exon
ATTTGAACGTATTCATACAAAGAAAGGGAACTACAGTAAGTCACTAGTTTCAAACCAAGAAGACGTAGATGATTTAGCAACCTTGGAGGTACTGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007647-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.019 C2=0.029
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.2=100)
A:
PF0006920=Pkinase=PD(7.9=39.6)
C2:
PF0006316=Myosin_head=PU(1.6=32.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCTCCTCCAACACTACAGC
R:
CCTCCAAGGTTGCTAAATCATCT
Band lengths:
154-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]