MmuEX6099224 @ mm10
Exon Skipping
Gene
ENSMUSG00000025716 | Myo3a
Description
myosin IIIA [Source:MGI Symbol;Acc:MGI:2183924]
Coordinates
chr2:22294473-22323673:+
Coord C1 exon
chr2:22294473-22294538
Coord A exon
chr2:22297563-22297718
Coord C2 exon
chr2:22323574-22323673
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTTTGCCAGTGCAGATG
3' ss Score
4.72
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAATCCACCCCCTAAACTCCGGCAGCCTGAGCTGTGGTCCGCAGAGTTCAATGACTTCATTAGCAA
Seq A exon
ATGCTTGACCAAAGATTATGAAAAGCGTCCAACAGTGTCAGATCTTTTGAAGCATAAATTTATTACTCAGATCGAGGGCAAAGATGTGATACTACAAAAACAACTAATGGAATTCATTGATATCCATCAATGCCTGGGAAGCACAGAGAAGGCCAG
Seq C2 exon
GCATGAACGAATTCATACCAAGAAAGGTAATTTAAATAGATCTCTCATTTCCAGTCTGAAGGATGTAGACGATTTGGCAACCCTAGATGTTCTGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025716-'11-10,'11-9,12-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.019 C2=0.118
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.2=100)
A:
PF0006920=Pkinase=PD(7.9=39.6)
C2:
PF0006316=Myosin_head=PU(1.6=32.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCCACCCCCTAAACTCCG
R:
TCCAGAACATCTAGGGTTGCCA
Band lengths:
162-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types