HsaEX0041168 @ hg19
Exon Skipping
Gene
ENSG00000095777 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:7601]
Coordinates
chr10:26312951-26356003:+
Coord C1 exon
chr10:26312951-26313016
Coord A exon
chr10:26315306-26315461
Coord C2 exon
chr10:26355904-26356003
Length
156 bp
Sequences
Splice sites
3' ss Seq
GTTCTTTTTTGCCAGTGCAGGTG
3' ss Score
4.53
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GAATCCACCCCCAAAACTAAGGCAGCCTGAGCTATGGTCAGCAGAATTCAATGACTTCATAAGCAA
Seq A exon
GTGCTTGACTAAAGATTATGAAAAGCGTCCAACAGTGTCAGAACTTTTACAGCATAAATTCATTACTCAAATTGAGGGCAAAGATGTGATGCTACAAAAACAACTAACGGAATTCATTGGCATCCATCAATGCATGGGAGGCACAGAAAAGGCCAG
Seq C2 exon
ACGTGAACGTATTCACACGAAGAAAGGGAACTTCAACCGACCTCTAATATCCAATCTGAAGGATGTAGATGATTTAGCAACCCTAGAAATTTTGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095777_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.057 C2=0.118
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.2=100)
A:
PF0006920=Pkinase=PD(7.9=39.6)
C2:
PF0006316=Myosin_head=PU(1.6=32.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCCCAAAACTAAGGCAG
R:
CTCATCCAAAATTTCTAGGGTTGCT
Band lengths:
162-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)