DreEX6093862 @ danRer10
Exon Skipping
Gene
ENSDARG00000010186 | myo3a
Description
myosin IIIA [Source:ZFIN;Acc:ZDB-GENE-041026-4]
Coordinates
chr24:6190228-6190949:-
Coord C1 exon
chr24:6190884-6190949
Coord A exon
chr24:6190459-6190614
Coord C2 exon
chr24:6190228-6190263
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTTGATTGTGTCCCCTTCAGGTG
3' ss Score
10.76
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
Exon sequences
Seq C1 exon
AAATCCACCACCCACTCTACACCAGCCAGAGCTCTGGTCAAACGACTTTAACGATTTCATACGCAA
Seq A exon
GTGTCTGATAAAGGATTTTGAGCTCAGGCCCAATGTGCTTGACCTTCTTCAGCATGTCTTCATCAAACAGATTGTGGGCCGAGAGAAGACGCTGCAGAAGCAGCTGATGGAGCTAATCGACCTCAACCAGCAAATGGGCATCATTGAGAAAACAAG
Seq C2 exon
CCTTCTCGGAAAATCTGACAGGGACAGTGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010186-'9-8,'9-7,10-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.019 C2=0.821
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.2=100)
A:
PF0006920=Pkinase=PD(7.9=39.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCACCACCCACTCTACACC
R:
TGGAGTCACTGTCCCTGTCAG
Band lengths:
99-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]