RnoEX6058945 @ rn6
Exon Skipping
Gene
ENSRNOG00000017816 | Pde6a
Description
phosphodiesterase 6A [Source:RGD Symbol;Acc:1306835]
Coordinates
chr18:56592398-56593219:+
Coord C1 exon
chr18:56592398-56592485
Coord A exon
chr18:56592599-56592699
Coord C2 exon
chr18:56593112-56593219
Length
101 bp
Sequences
Splice sites
3' ss Seq
TGTCTAACTCTTCTCTTTAGAGC
3' ss Score
8.57
5' ss Seq
CAAGTGGGT
5' ss Score
4.82
Exon sequences
Seq C1 exon
ATCACAGAACCCCCTGGCCAAGCTTCATGGGTCCTCCATCCTGGAAAGGCATCATTTGGAGTTTGGCAAAACATTGCTGAGAGATGAG
Seq A exon
AGCCTGAATATCTTTCAGAACCTGAATCGCCGGCAGCACGAGCATGCGATCCACATGATGGACATTGCGATCATCGCCACGGACCTTGCCCTGTATTTCAA
Seq C2 exon
GAAAAGGACAATGTTCCAGAAGATTGTGGATCAGTCAAAGACATATGAGAGTACCCAGGAGTGGACCCAGTACATGATGCTGGAGCAGACACGGAAGGAAATTGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017816-'15-20,'15-17,16-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(11.6=100)
A:
PF0023314=PDEase_I=FE(13.3=100)
C2:
PF0023314=PDEase_I=FE(14.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACAGAACCCCCTGGCC
R:
CACAATTTCCTTCCGTGTCTGC
Band lengths:
194-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]