GgaEX6050551 @ galGal4
Exon Skipping
Gene
ENSGALG00000015373 | PDE6B
Description
Phosphodiesterase 6b subunit [Source:UniProtKB/TrEMBL;Acc:F1NA42]
Coordinates
chrZ:53317543-53319776:-
Coord C1 exon
chrZ:53319689-53319776
Coord A exon
chrZ:53319043-53319143
Coord C2 exon
chrZ:53317543-53317650
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTCTTCTTTTTCAGTCA
3' ss Score
10.76
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ATCTCAAAATCCTTTAGCTAAACTTCATGGATCCTCAATTTTAGAGAGGCATCACCTGGATTTTGGAAAGTTTTTGCTCTCTGAAGAG
Seq A exon
TCACTGAATATATGCCAGAACCTCAACCGGAGACAGCATGAGCACATGATTCATCTGATGGATATTGCCATCATTGCAACAGATCTGGCACTGTATTTCAA
Seq C2 exon
AAAGAGAACGATGTTTCAGAAGATCGTTGACGAGTCTAAGACATATGACAATACAACTGCCTGGACTGATTACCTGTCTCTGGAGACGACAAAGAAAGAAGTTGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015373-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(11.6=100)
A:
PF0023314=PDEase_I=FE(13.3=100)
C2:
PF0023314=PDEase_I=FE(14.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTTTAGCTAAACTTCATGGATCC
R:
GACAACTTCTTTCTTTGTCGTCTCC
Band lengths:
186-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]