Special

MmuEX6019412 @ mm10

Exon Skipping

Gene
Description
phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide [Source:MGI Symbol;Acc:MGI:97525]
Coordinates
chr5:108427107-108427904:+
Coord C1 exon
chr5:108427107-108427194
Coord A exon
chr5:108427594-108427694
Coord C2 exon
chr5:108427797-108427904
Length
101 bp
Sequences
Splice sites
3' ss Seq
CCAACTTATGGTCCCCACAGAGC
3' ss Score
7.8
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
ATCGCAGAATCCTCTAGCCAAGTTACATGGCTCCTCAATTCTGGAAAGGCACCACCTGGAATTTGGGAAGTTTCTGTTGGCAGAGGAG
Seq A exon
AGCCTGAACATCTATCAGAACCTGAACCGGCGGCAGCATGAACATGTGATCCACCTCATGGACATTGCCATCATTGCCACCGACCTGGCCCTCTACTTCAA
Seq C2 exon
GAAGAGAACAATGTTCCAGAAGATTGTGGATGAGTCTAAGAACTATGAAGATAAGAAGAGTTGGGTTGAGTACTTATCCTTAGAGACCACACGAAAGGAGATAGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029491-'21-37,'21-26,31-37=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0023314=PDEase_I=FE(11.6=100)
A:
PF0023314=PDEase_I=FE(13.3=100)
C2:
PF0023314=PDEase_I=FE(14.5=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCAGAATCCTCTAGCCAAGT
R:
TGACTATCTCCTTTCGTGTGGTCT
Band lengths:
194-295
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types