GgaEX6050551 @ galGal3
Exon Skipping
Gene
ENSGALG00000015373 | Q802E5_CHICK
Description
NA
Coordinates
chrZ:52375779-52378012:-
Coord C1 exon
chrZ:52377925-52378012
Coord A exon
chrZ:52377279-52377379
Coord C2 exon
chrZ:52375779-52375886
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTCTTCTTTTTCAGTCA
3' ss Score
10.76
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ATCTCAAAATCCTTTAGCTAAACTTCATGGATCCTCAATTTTAGAGAGGCATCACCTGGATTTTGGAAAGTTTTTGCTCTCTGAAGAG
Seq A exon
TCACTGAATATATGCCAGAACCTCAACCGGAGACAGCATGAGCACATGATTCATCTGATGGATATTGCCATCATTGCAACAGATCTGGCACTGTATTTCAA
Seq C2 exon
AAAGAGAACGATGTTTCAGAAGATCGTTGACGAGTCTAAGACATATGACAATACAACTGCCTGGACTGATTACCTGTCTCTGGAGACGACAAAGAAAGAAGTTGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015373-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(14.5=100)
A:
PF0023314=PDEase_I=FE(16.5=100)
C2:
PF0023314=PDEase_I=FE(18.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTTTAGCTAAACTTCATGGATCC
R:
GACAACTTCTTTCTTTGTCGTCTCC
Band lengths:
186-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]