RnoEX6041398 @ rn6
Exon Skipping
Gene
ENSRNOG00000000065 | Pde6b
Description
phosphodiesterase 6B [Source:RGD Symbol;Acc:1311039]
Coordinates
chr14:2332338-2333135:-
Coord C1 exon
chr14:2333048-2333135
Coord A exon
chr14:2332547-2332647
Coord C2 exon
chr14:2332338-2332445
Length
101 bp
Sequences
Splice sites
3' ss Seq
CCAACTGATGGTCCCCACAGAGC
3' ss Score
6.77
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
ATCTCAGAATCCTCTAGCCAAACTACATGGCTCCTCAATTCTGGAAAGGCACCACTTGGAGTTTGGGAAGTTTCTGTTGGCAGAGGAG
Seq A exon
AGCCTGAATATCTACCAGAACCTGAACCGGCGGCAGCATGAACATGTGATCCACCTCATGGACATCGCCATCATTGCCACTGACCTGGCCCTCTACTTCAA
Seq C2 exon
GAAGAGAACCATGTTCCAGAAGATTGTGGATGAATCTAAGAACTATGAAGATAAGAAGAGCTGGGTTGAGTACTTGTCCCTAGAGACCACACGAAAGGAGATCGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000065-'16-21,'16-20,17-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(11.6=100)
A:
PF0023314=PDEase_I=FE(13.3=100)
C2:
PF0023314=PDEase_I=FE(14.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGAATCCTCTAGCCAAACT
R:
TCCTTTCGTGTGGTCTCTAGGG
Band lengths:
186-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]