DreEX6057944 @ danRer10
Exon Skipping
Gene
ENSDARG00000000380 | pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:ZFIN;Acc:ZDB-GENE-030616-42]
Coordinates
chr14:24715998-24719710:-
Coord C1 exon
chr14:24719623-24719710
Coord A exon
chr14:24719350-24719450
Coord C2 exon
chr14:24715998-24716105
Length
101 bp
Sequences
Splice sites
3' ss Seq
GAAATAATTTGTTTTCCAAGGCC
3' ss Score
4.83
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
ATCTGGGAATCCACTAGCAAAGCTGCATGGTTCCTCCATTCTCGAGAGGCACCATCTGGAATTTGGAAAAACTCTGCTTAGAGACGAG
Seq A exon
GCCTTAAATATCTACCAGAATCTGAACAGAAGACAGCACGAAACCGTCATCCATTTGATGGACATTGCTATCATCGCAACAGACTTGGCCTTGTATTTCAA
Seq C2 exon
GAAAAGGACCATGTTTCAGAAGATTGTGGATCAGTCTAAGACCTACGACAGCTGGGACAGTTGGACCAAATACATGATGTTGGAAACCACTCGGAAAGAGATTGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000380-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(11.6=100),PF0771711=OB_NTP_bind=FE(26.4=100)
A:
PF0023314=PDEase_I=FE(13.3=100),PF0771711=OB_NTP_bind=FE(30.0=100)
C2:
PF0023314=PDEase_I=FE(14.5=100),PF0771711=OB_NTP_bind=PD(1.8=5.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGGAATCCACTAGCAAAGC
R:
TGACAATCTCTTTCCGAGTGGT
Band lengths:
194-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]