BtaEX6032564 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017480 | PDE6B
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:HGNC Symbol;Acc:HGNC:8786]
Coordinates
chr6:108843708-108844642:+
Coord C1 exon
chr6:108843708-108843808
Coord A exon
chr6:108844199-108844299
Coord C2 exon
chr6:108844535-108844642
Length
101 bp
Sequences
Splice sites
3' ss Seq
CACCCCCCGCACTCCCGCAGACC
3' ss Score
8.44
5' ss Seq
TAAGTGGGT
5' ss Score
0.99
Exon sequences
Seq C1 exon
ACCTCTGTGACAGGTCCCAGAACCCTTTAGCCAAGCTCCACGGCTCCTCGATTTTGGAGCGACACCACCTGGAGTTCGGGAAGTTCCTGCTCTCCGAGGAG
Seq A exon
ACCCTGAACATCTACCAGAACCTGAACCGGCGGCAGCACGAGCACGTGATCCACCTCATGGACATCGCCATCATCGCCACAGACCTGGCGCTCTACTTTAA
Seq C2 exon
AAAAAGGACAATGTTCCAGAAGATTGTGGATGAGTCCAAGAACTACGAGGACAGGAAGAGCTGGGTGGAGTACCTGTCCTTGGAGACCACGAGGAAGGAGATCGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017480-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(16.2=100)
A:
PF0023314=PDEase_I=FE(16.2=100)
C2:
PF0023314=PDEase_I=FE(17.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGTGACAGGTCCCAGAA
R:
CGATCTCCTTCCTCGTGGTCT
Band lengths:
204-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]