HsaEX6083083 @ hg38
Exon Skipping
Gene
ENSG00000133256 | PDE6B
Description
phosphodiesterase 6B [Source:HGNC Symbol;Acc:HGNC:8786]
Coordinates
chr4:663100-664221:+
Coord C1 exon
chr4:663100-663187
Coord A exon
chr4:663770-663870
Coord C2 exon
chr4:664114-664221
Length
101 bp
Sequences
Splice sites
3' ss Seq
GCTGGGCATAACCTCCGCAGACC
3' ss Score
5.15
5' ss Seq
CAAGTGCGC
5' ss Score
4.41
Exon sequences
Seq C1 exon
GTCCCAGAACCCCTTGGCTAAGCTCCACGGCTCCTCGATTTTGGAGCGGCACCACCTGGAGTTTGGGAAGTTCCTGCTCTCGGAGGAG
Seq A exon
ACCCTGAACATCTACCAGAACCTGAACCGGCGGCAGCACGAGCACGTGATCCACCTGATGGACATCGCCATCATCGCCACGGACCTGGCCCTGTACTTCAA
Seq C2 exon
GAAGAGAGCGATGTTTCAGAAGATCGTGGATGAGTCCAAGAACTACCAGGACAAGAAGAGCTGGGTGGAGTACCTGTCCCTGGAGACGACCCGGAAGGAGATCGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133256-'36-35,'36-34,37-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(11.6=100)
A:
PF0023314=PDEase_I=PU(22.9=97.1)
C2:
PF0023314=PDEase_I=FE(14.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGAACCCCTTGGCTAAG
R:
ATGACGATCTCCTTCCGGGTC
Band lengths:
195-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains