RnoEX6061305 @ rn6
Exon Skipping
Gene
ENSRNOG00000000728 | Clic2
Description
chloride intracellular channel 2 [Source:RGD Symbol;Acc:1306580]
Coordinates
chr20:308761-310380:+
Coord C1 exon
chr20:308761-308867
Coord A exon
chr20:309512-309693
Coord C2 exon
chr20:309962-310380
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTATTACTTTACTGTCTTAGATT
3' ss Score
7.95
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTATCCTCATCTGAGTCCCAAGTACAAGGAATCTTTCGATGTGGGCTGTAATCTCTTTGCCAAATTTTCTGCGTACATTAAGAATACACAAAAGGAAGCAAATAAGA
Seq A exon
ATTTTGAAAAATCTCTGCTTAGAGAATTTAAACGTTTGGATGACTACTTAAATACCCCACTTCTGGATGAAATTGATCCTGACAGCACCGAGGAACGTACACTTTCCAGAAGACTGTTCTTGGATGGGGATCAACTAACACTGGCTGACTGTAGTTTGTTGCCCAAACTGAACATTATTAAA
Seq C2 exon
GTTGCTGCGAAGAAGTACCGTGACTTTGACATTCCAGCAGAATTCTCAGGAGTCTGGCGCTATCTCCACAATGCCTACGCCCGTGAAGAATTTGCCCACACATGTCCTGAAGACAAAGAAATTGAAAATACCTATGCAAGTGTGGCTAAACAGTAGAGACATCTCTTTCAGAAGCAAAAGCTCTCTTTGTTACCTAATTTCACTTTGTGCCTTATTAGAAAGATTATTGGAAATAATAACATAGAAAATACTATTTCCTCTAGTCAATCTAGTAATATAAAAAATAGAAAAAAAATAGAAAAGTTTTCCATTAGCCATAAACAATTCAACCGCTTTGTATCTTGCAGATGGCTGTATTTTCATTTCAATTATTCCTGCAACAAACACTGAATCTTAAAAACATGGAAAGCATCAATATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000728-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.020
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(3.9=8.1),PF134101=GST_C_2=FE(25.2=100)
A:
PF134101=GST_C_2=FE(42.0=100)
C2:
PF134101=GST_C_2=PD(16.1=44.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATCTTTCGATGTGGGCTG
R:
TGTCTCTACTGTTTAGCCACACT
Band lengths:
242-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]