BtaEX6005232 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010948 | CLIC2
Description
Bos taurus chloride intracellular channel 2 (CLIC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001081727]
Coordinates
chrX:38520083-38523525:+
Coord C1 exon
chrX:38520083-38520189
Coord A exon
chrX:38520875-38521056
Coord C2 exon
chrX:38521665-38523525
Length
182 bp
Sequences
Splice sites
3' ss Seq
CTATTATTTCATTGCCTCAGCCT
3' ss Score
5.67
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTATCCTCACTTGAGTCCCAGGAACAAGGAGTCCTTTGATGTGGGCTGTAATCTCTTTGCCAAGTTTTCTGCATACATTAAGAATACACAAAAGGAGGCCAATAAGA
Seq A exon
CCTTTGAAAAATCTCTGCTTAAGGAATTTAAGCGTCTGGATGACTATTTGAACACCCCACTTCTGGATGAAATTGATCCAGACAGTACTGAGGAACTCACAGTCTCCAGAAGATTGTTCTTGGATGGCGATCAACTGACCCTGGCTGACTGTAGTTTGTTACCCAAACTGCACATTATTAAA
Seq C2 exon
GTTGCTGCAAAGAAATACCGTGACTTTGACATTCCAGTAGAATTCTCAGGAGTCTGGCGCTATCTCCACAATGCCTATGCCCGTGAAGAATTTACCCACACATGTCCAGAAGACAAAGAAATTGAAAATACCTATGCAAGTGTGGCTAAACAGAAGAGTTAGGACAGCCCTTTCAGTAGAAAAATCTCTCTTTTCACTTGCTATCATACTAGAAAGTCTTTTAGAAATAAGAATATGGAAAATGCTGTTTCCTCTATTCAACTTTCTTATGAAAAAGAATACTGTATTTTCTGTACCTAGTTAATCCAAACTATCTGCTTACTGTGTATTTTACAGGTCTTCATATTTCATTTTTTAATTCCCATGGCACAACCACTGCAATTTTAAATTATATGAAAAGTGTCAATATCTTTTACCATTTGATTGAAATCCTAGAAGGTATCATGTGTGCAAGCTCAACCGATGGCTAAAGTTACAAATGACATATAGTCATGGTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010948-'7-5,'7-4,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.016 C2=0.019
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(25.0=100)
A:
PF134101=GST_C_2=FE(41.7=100)
C2:
PF134101=GST_C_2=PD(16.0=42.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCCTTTGATGTGGGCTG
R:
AGGGCTGTCCTAACTCTTCTGT
Band lengths:
251-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]