RnoEX6056595 @ rn6
Exon Skipping
Gene
ENSRNOG00000026870 | Clic6
Description
chloride intracellular channel 6 [Source:RGD Symbol;Acc:727938]
Coordinates
chr11:32689054-32699382:+
Coord C1 exon
chr11:32689054-32689160
Coord A exon
chr11:32689837-32690018
Coord C2 exon
chr11:32697736-32699382
Length
182 bp
Sequences
Splice sites
3' ss Seq
CTCTTGCCTTTGTGTTTTAGTTT
3' ss Score
10.02
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GTACCCTAAGCTGGGAACCCAACACCCCGAATCCAACTCAGCGGGAAATGACGTTTTTGCCAAATTCTCAGCGTTTATTAAGAACACCAAGAAGGATGCAAATGACA
Seq A exon
TTTATGAAAAGAACCTACTACGGGCCCTGAAGAAGCTGGACAGTTACTTAAACAGCCCGCTGCCAGACGAAATAGATGCCTACAGTACGGAGGATGTCACTGTTTCCCAGAGGAAGTTTCTGGATGGGGATGAGCTCACACTGGCCGACTGTAACCTCTTACCCAAGCTTCACATCATTAAG
Seq C2 exon
ATTGTGGCCAAGAAATACAGAGGTTTTGAGTTTCCTTCTGAAATGACTGGCATTTGGAGGTACTTGAACAATGCTTATGCCCGGGATGAGTTCACTAACACGTGTCCAGCTGACCAGGAGATTGAACACGCGTATTCAGACGCAGCGAAAAGGATGAAGTAATGCTGGCTTGCGTCTTTCCTCAGATGAGTGAACAGGGCTTCCAGGAGGACCTTCTATGTTTCTTCCCCAAAACAGCTTTTGCAAAAAGAACGCTGACTCTCTAAATGCCACCGCAGGATGCATGGTCTTGCGATTTGTCTGCTCCATCTCATCTACGCTAATTTATATCTTTGAGATTCAGTCCTCTGGTCGGCCATGTTTAGGGAAATAGTGTTTTGTAGCTTGTTTCAGAGCAAACTGGCTTTGACTCAAGTTCTCACCATTTTTAAGAGGTTAGTCTTTGATAGTTGTGATAATCACATGACTCCCTTTTCTCTTCTTAAATATCAGTTTAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026870-'6-9,'6-6,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.243 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=PU(11.1=24.3)
A:
PF134101=GST_C_2=FE(63.8=100)
C2:
PF134101=GST_C_2=PD(24.5=42.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAATCCAACTCAGCGGGAAA
R:
ACGCAAGCCAGCATTACTTCA
Band lengths:
255-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]