GgaEX0023583 @ galGal3
Exon Skipping
Gene
ENSGALG00000016020 | CLIC6
Description
NA
Coordinates
chr1:109444088-109447354:+
Coord C1 exon
chr1:109444088-109444194
Coord A exon
chr1:109444575-109444756
Coord C2 exon
chr1:109446932-109447354
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTGTCTTAACCTAGATC
3' ss Score
7.84
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
Exon sequences
Seq C1 exon
GTATCCCAAACTCGCACCGAAGCACCCCGAGTCCAACTCTGCAGGAAACGATGTGTTTGCAAAATTCTCTGCATTCATCAAGAACCCAAGAAAAGATGCTAATGAAA
Seq A exon
ATCTGGAAAAATCTTTGCTTAAAGCCCTGAGGAAGCTGGACAACTATTTAAATAGCCCCTTGCCTGATGAAATTGATGCTTACAGCACTGAGGAGATCACTGTGTCCTGCCGCAAATTCCTGGATGGAGATGAGCTCACCTTAGCGGATTGCAACCTCCTACCAAAGCTCCACATAATTAAG
Seq C2 exon
GTTGTCGCAAAGAAATACAGAAATTTTGATTTCCCACCTGAAATGACGGGGATTTCAAGATACTTGAATAATGCATATGCAAGAGATGAATTTACAAACACTTGTCCTGCTGATCAAGAAATCGAGTATGCATATTTGGACGTCGCAAAGAGAATGAAGTAAATGGAAGATGTTTCCCTTCTTTATTACTTCTGAGATTTTATGGGCACCAGCCAATATGGAAACAAAACAAGCCAGCGTGCATTCTGCAGTGTAATTTTAAGTTCTGTTATTGGCCAATCCTTCTTTTGTAATAACTGTGTAGCGTTGTTTGCTCATTCTTAAATGATGTATGTATATGTGTGTCCGTACAGATGTACACACACACGAACGTGTGTTATGCACTCCAAGTTAAAGGCATCAGTCAGTACTCAGGCTTTTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016020-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=PU(21.3=62.2)
A:
PF134101=GST_C_2=FE(55.6=100)
C2:
PF134101=GST_C_2=PD(21.3=42.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCCCAAACTCGCACCGAA
R:
TTTGCGACGTCCAAATATGCA
Band lengths:
256-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]