MmuEX0011686 @ mm9
Exon Skipping
Gene
ENSMUSG00000022949 | Clic6
Description
chloride intracellular channel 6 [Source:MGI Symbol;Acc:MGI:2146607]
Coordinates
chr16:92530114-92541488:+
Coord C1 exon
chr16:92530114-92530220
Coord A exon
chr16:92531001-92531182
Coord C2 exon
chr16:92539680-92541488
Length
182 bp
Sequences
Splice sites
3' ss Seq
CTCTTGCCTTTGTGTTTTAGTTT
3' ss Score
10.02
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
Exon sequences
Seq C1 exon
GTACCCTAAGCTGGGAACTCAGCACCCTGAGTCCAACTCAGCGGGAAATGATGTTTTTGCCAAATTCTCAGCATTTATTAAAAACACCAAGAAGGATGCAAATGAGA
Seq A exon
TTTATGAAAAGAACCTACTACGGGCCCTGAAGAAGCTGGACAGTTACTTAAACAGCCCGCTGCCAGACGAAATCGATGCCGACAGTTCAGAGGATGTCACTGTTTCACAAAGGAAGTTTCTGGATGGGGATGAGCTCACACTGGCTGACTGTAACCTCTTACCCAAGCTCCATATCATTAAG
Seq C2 exon
ATTGTCGCCAAGAAATATAGAGATTTTGAGTTTCCTTCTGAAATGACCGGCATTTGGAGGTACTTGAACAACGCTTACGCCCGGGATGAGTTCACTAACACGTGTCCGGCCGACCGGGAGATTGAACACGCATATTCCGATGCAGCGAAAAGGATGAAGTGACACTGGCTTGCAGCAGATGAGTGGGCGGGCCTTCCAGGAGAGCCCTCTGTTTCTTCCCTGAAACAGCTCTTTTGCGAAATAGCGCTGACTCTCTAAATGCCACCATAGGATGCGGGGCCTTGAGATTTGTCTACTCATTCCTCCTACACTAATTTATATCTTTGAGATTCAGTTCTCTGGTAATCCATGTTTAGGGCGATAGTGTTTTGTAGCTTGTTTCAGGGCAAACAGGCTTTGACTTAAGTTCTTGGCATTTTAAAGAGGTTAGTCTTTTTTTTTTTTTTGATAGTTTTCATAATCACCTGGCTTGTTTTTCTCTTCTCAAGTATCAGTTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022949_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=0.066 C2=0.000
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=PU(12.4=32.4)
A:
PF134101=GST_C_2=FE(61.9=100),PF075506=DUF1533=PU(73.5=59.0)
C2:
PF134101=GST_C_2=PD(23.7=42.6),PF075506=DUF1533=PD(22.4=20.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCAACTCAGCGGGAAATG
R:
CTGCAAGCCAGTGTCACTTCA
Band lengths:
253-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: