GgaEX0023583 @ galGal4
Exon Skipping
Gene
ENSGALG00000016020 | CLIC6
Description
chloride intracellular channel 6 [Source:HGNC Symbol;Acc:HGNC:2065]
Coordinates
chr1:105367386-105386196:+
Coord C1 exon
chr1:105367386-105367492
Coord A exon
chr1:105367873-105368054
Coord C2 exon
chr1:105370230-105386196
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTGTCTTAACCTAGATC
3' ss Score
7.84
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
Exon sequences
Seq C1 exon
GTATCCCAAACTCGCACCGAAGCACCCCGAGTCCAACTCTGCAGGAAACGATGTGTTTGCAAAATTCTCTGCATTCATCAAGAACCCAAGAAAAGATGCTAATGAAA
Seq A exon
ATCTGGAAAAATCTTTGCTTAAAGCCCTGAGGAAGCTGGACAACTATTTAAATAGCCCCTTGCCTGATGAAATTGATGCTTACAGCACTGAGGAGATCACTGTGTCCTGCCGCAAATTCCTGGATGGAGATGAGCTCACCTTAGCGGATTGCAACCTCCTACCAAAGCTCCACATAATTAAG
Seq C2 exon
GTTGTCGCAAAGAAATACAGAAATTTTGATTTCCCACCTGAAATGACGGGGATTTCAAGATACTTGAATAATGCATATGCAAGAGATGAATTTACAAACACTTGTCCTGCTGATCAAGAAATCGAGTATGCATATTTGGACGTCGCAAAGAGAATGAAGTAAATGGAAGATGTTTCCCTTCTTTATTACTTCTGAGATTTTATGGGCACCAGCCAATATGGAAACAAAACAAGCCAGCGTGCATTCTGCAGTGTAATTTTAAGTTCTGTTATTGGCCAATCCTTCTTTTGTAATAACTGTGTAGCGTTGTTTGCTCATTCTTAAATGATGTATGTATATGTGTGTCCGTACAGATGTACACACACACGAACGTGTGTTATGCACTCCAAGTTAAAGGCATCAGTCAGTACTCAGGCTTTTGCTGAAGCTAGGGAAACAGCGTAGGTCACACGGTTGTAGCAATATTATAGACTAGCGACATGCTAAATGACTGGATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016020_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=PU(20.9=62.2)
A:
PF134101=GST_C_2=FE(54.5=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCCCAAACTCGCACCGAA
R:
TTTGCGACGTCCAAATATGCA
Band lengths:
256-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]