DreEX0022102 @ danRer10
Exon Skipping
Gene
ENSDARG00000070584 | clic5b
Description
chloride intracellular channel 5b [Source:ZFIN;Acc:ZDB-GENE-040426-2542]
Coordinates
chr20:44063947-44071781:+
Coord C1 exon
chr20:44063947-44064053
Coord A exon
chr20:44066890-44067071
Coord C2 exon
chr20:44070689-44071781
Length
182 bp
Sequences
Splice sites
3' ss Seq
ATGTGATGATGTTTTGTTAGCTC
3' ss Score
2.77
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTACCCCAAACTTGCAGCCAGGCACAGGGAGTCAAACGCAGCAGGGAATGACATATTTGCAAAGTTCTCGGCTTTCATAAAAAACACGAAGCCAGATGCGAATGAAG
Seq A exon
CTCTGGAGAAGGGTTTGACAAAGGCACTCAAGAAGCTGGATGAGTACCTGAACAGTCCTTTGCCTGATGAGGTTGATGCCGACAGCATGGAGGAGGAAAAGGCCTCCAACCGCAGGTTCCTGGACGGGAACGATCTGACTCTGGCAGACTGTAACCTGCTGCCAAAACTCCACATTGTGAAG
Seq C2 exon
GTCGTTGCCAAGAAATACCGGAACTTTGACATTCCCAGTGACCTGACCGGCGTGTGGCGCTATCTGAACAGTGCGTATGCACAAGAAGAGTTCACCAACACCTGTGCTGCAGACAACGAGATTGAATCTGCATATCTGGATGTGGCCAAGAGGCTAACCAAGTAAACAGATCAACAAATCTGACATTTGGGGGGCTGGGGAGATGATGTTTTCCATGTAATTCAAAATTATTAATCTAAAACTACAAGCAATATGTATTTTCATTCATCAAGAGCCCTTACAATATCACGTAAGGACTGGTGCTTTGATATAATTCCGAATACTTCATTTGTGGACTCAAATGGGAATGCAAAATATCACCCAACACATATTTATCTGTTGCTCATATAAAAGCGATTGTTGTGTCTCCATTTAAAGAGACTTCTCTTAACACTTTTCTGACTCTCTCTCAACATAACAACTAGTTGTCCATGTTTTACTCTGTTTCTGAATTCTTGTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070584-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.262 C2=0.000
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(27.3=100)
A:
PF134101=GST_C_2=FE(45.5=100)
C2:
PF134101=GST_C_2=PD(17.4=41.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCCCAAACTTGCAGCCAG
R:
TGGCCACATCCAGATATGCAG
Band lengths:
255-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]